J4_7LVK_010

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

7LVK|1|I|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LVK_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.0597

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|C|2285
7LVK|1|I|G|2286
7LVK|1|I|A|2287
7LVK|1|I|A|2288
7LVK|1|I|G|2289
*
7LVK|1|I|U|2343
7LVK|1|I|U|2344
7LVK|1|I|G|2345
7LVK|1|I|A|2346
7LVK|1|I|C|2347
*
7LVK|1|I|G|2370
7LVK|1|I|G|2371
7LVK|1|I|U|2372
*
7LVK|1|I|A|2381
7LVK|1|I|G|2382
7LVK|1|I|G|2383

Current chains

Chain I

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L18

Chain e

50S ribosomal protein L27

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35