J4_7M4W_008

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AACUG*CAUAG*UGAU*AUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4W_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0856

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7M4W|1|A|A|1768
7M4W|1|A|A|1769
7M4W|1|A|C|1770
7M4W|1|A|U|1771
7M4W|1|A|G|1772
*
7M4W|1|A|C|1784
7M4W|1|A|A|1785
7M4W|1|A|U|1786
7M4W|1|A|A|1787
7M4W|1|A|G|1788
*
7M4W|1|A|U|1823
7M4W|1|A|G|1824
7M4W|1|A|A|1825
7M4W|1|A|U|1826
*
7M4W|1|A|A|1971
7M4W|1|A|U|1972
7M4W|1|A|A|1973
7M4W|1|A|A|1974
7M4W|1|A|U|1975

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2