J4_7MD7_007

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MD7_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0427

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7MD7|1|1A|G|1772
7MD7|1|1A|A|1773
7MD7|1|1A|C|1774
7MD7|1|1A|U|1775
7MD7|1|1A|G|1776
*
7MD7|1|1A|C|1788
7MD7|1|1A|A|1789
7MD7|1|1A|C|1790
7MD7|1|1A|A|1791
7MD7|1|1A|G|1792
*
7MD7|1|1A|C|1827
7MD7|1|1A|G|1828
7MD7|1|1A|A|1829
7MD7|1|1A|C|1830
*
7MD7|1|1A|G|1975
7MD7|1|1A|U|1976
7MD7|1|1A|A|1977
7MD7|1|1A|A|1978
7MD7|1|1A|C|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA