J4_7MD7_027

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

7MD7|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MD7_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1238

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7MD7|1|1a|G|142
7MD7|1|1a|A|143
7MD7|1|1a|G|144
*
7MD7|1|1a|C|178
7MD7|1|1a|A|179
7MD7|1|1a|U|180
7MD7|1|1a|G|181
7MD7|1|1a|U|182
7MD7|1|1a|G|183
*
7MD7|1|1a|C|194
7MD7|1|1a|A|195
7MD7|1|1a|A|196
7MD7|1|1a|A|197
7MD7|1|1a|G|198
*
7MD7|1|1a|C|219
7MD7|1|1a|G|220
7MD7|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20