J4_7MPI_002

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MPI_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1059

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7MPI|1|A1|C|185
7MPI|1|A1|U|186
7MPI|1|A1|A|187
7MPI|1|A1|U|188
7MPI|1|A1|G|189
*
7MPI|1|A1|C|205
7MPI|1|A1|G|206
7MPI|1|A1|U|207
7MPI|1|A1|C|208
*
7MPI|1|A1|G|212
7MPI|1|A1|A|213
7MPI|1|A1|G|214
*
7MPI|1|A1|C|226
7MPI|1|A1|G|227
7MPI|1|A1|U|228
7MPI|1|A1|G|229
7MPI|1|A1|U|230
7MPI|1|A1|G|231

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A