J4_7MPI_003

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

7MPI|1|A1|A|1452, 7MPI|1|A1|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MPI_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.0875

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|A1|C|1451
7MPI|1|A1|A|1452
7MPI|1|A1|A|1453
7MPI|1|A1|A|1454
7MPI|1|A1|U|1455
7MPI|1|A1|A|1456
7MPI|1|A1|U|1457
*
7MPI|1|A1|A|1475
7MPI|1|A1|G|1476
*
7MPI|1|A1|U|1877
7MPI|1|A1|G|1878
7MPI|1|A1|A|1879
7MPI|1|A1|U|1880
*
7MPI|1|A1|A|2352
7MPI|1|A1|G|2353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Ad

60S ribosomal protein L31-A