J4_7MQA_001
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7MQA|1|L1|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MQA_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2647
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7MQA|1|L1|C|98
7MQA|1|L1|A2M|99
7MQA|1|L1|U|100
7MQA|1|L1|U|101
7MQA|1|L1|A|102
7MQA|1|L1|A|103
7MQA|1|L1|A|104
7MQA|1|L1|PSU|105
7MQA|1|L1|C|106
*
7MQA|1|L1|G|355
7MQA|1|L1|C|356
7MQA|1|L1|C|357
*
7MQA|1|L1|G|405
7MQA|1|L1|PSU|406
7MQA|1|L1|G|407
7MQA|1|L1|A|408
7MQA|1|L1|C|409
*
7MQA|1|L1|G|431
7MQA|1|L1|G|432
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4, X isoform
- Chain L8
- 40S ribosomal protein S8
- Chain LD
- 40S ribosomal protein S11
- Chain NS
- Probable ATP-dependent RNA helicase DHX37
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SR
- 40S ribosomal protein S23
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