J4_7MSC_009

3D structure

PDB id

7MSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

7MSC|1|A|A|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MSC_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1243

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

7MSC|1|A|C|2523
7MSC|1|A|A|2524
7MSC|1|A|A|2525
7MSC|1|A|A|2526
7MSC|1|A|G|2527
*
7MSC|1|A|U|2581
7MSC|1|A|U|2582
7MSC|1|A|G|2583
7MSC|1|A|A|2584
7MSC|1|A|C|2585
*
7MSC|1|A|G|2608
7MSC|1|A|G|2609
7MSC|1|A|G|2610
*
7MSC|1|A|C|2619
7MSC|1|A|G|2620
7MSC|1|A|G|2621

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L33 2

Chain 3

50S ribosomal protein L35

Chain W

50S ribosomal protein L27