J4_7MSZ_001

3D structure

PDB id

7MSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAG*UGAAUCCG*UAAG

Length

20 nucleotides

Bulged bases

7MSZ|1|A|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MSZ_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1633

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7MSZ|1|A|C|270
7MSZ|1|A|U|271
*
7MSZ|1|A|G|459
7MSZ|1|A|A|460
7MSZ|1|A|G|461
7MSZ|1|A|U|462
7MSZ|1|A|A|463
7MSZ|1|A|G|464
*
7MSZ|1|A|U|488
7MSZ|1|A|G|489
7MSZ|1|A|A|490
7MSZ|1|A|A|491
7MSZ|1|A|U|492
7MSZ|1|A|C|493
7MSZ|1|A|C|494
7MSZ|1|A|G|495
*
7MSZ|1|A|U|510
7MSZ|1|A|A|511
7MSZ|1|A|A|512
7MSZ|1|A|G|513

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28