J4_7N2C_001

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7N2C|1|16|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2C_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1162

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7N2C|1|16|G|115
7N2C|1|16|A|116
7N2C|1|16|G|117
7N2C|1|16|U|118
7N2C|1|16|A|119
7N2C|1|16|A|120
7N2C|1|16|U|121
7N2C|1|16|G|122
*
7N2C|1|16|U|239
7N2C|1|16|G|240
*
7N2C|1|16|C|286
7N2C|1|16|U|287
7N2C|1|16|A|288
7N2C|1|16|G|289
*
7N2C|1|16|C|311
7N2C|1|16|C|312

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SP

30S ribosomal protein S16

Chain SQ

30S ribosomal protein S17