J4_7N2C_002

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7N2C|1|16|C|183, 7N2C|1|16|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2C_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1061

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7N2C|1|16|G|142
7N2C|1|16|A|143
7N2C|1|16|G|144
*
7N2C|1|16|C|178
7N2C|1|16|A|179
7N2C|1|16|U|180
7N2C|1|16|A|181
7N2C|1|16|A|182
7N2C|1|16|C|183
7N2C|1|16|G|184
*
7N2C|1|16|C|193
7N2C|1|16|C|194
7N2C|1|16|A|195
7N2C|1|16|A|196
7N2C|1|16|A|197
7N2C|1|16|G|198
*
7N2C|1|16|U|219
7N2C|1|16|G|220
7N2C|1|16|C|221

Current chains

Chain 16

16S rRNA

Nearby chains

Chain ST

30S ribosomal protein S20