J4_7N2C_009

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7N2C|1|23|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2C_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.058

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7N2C|1|23|U|1313
7N2C|1|23|C|1314
*
7N2C|1|23|G|1338
7N2C|1|23|G|1339
7N2C|1|23|U|1340
7N2C|1|23|G|1341
7N2C|1|23|A|1342
7N2C|1|23|G|1343
*
7N2C|1|23|C|1404
7N2C|1|23|U|1405
*
7N2C|1|23|A|1597
7N2C|1|23|A|1598
7N2C|1|23|U|1599
7N2C|1|23|C|1600
7N2C|1|23|G|1601
7N2C|1|23|U|1602
7N2C|1|23|A|1603

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LW

50S ribosomal protein L23