J4_7N2V_011

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2V_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.045

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7N2V|1|23|A|1772
7N2V|1|23|A|1773
7N2V|1|23|C|1774
7N2V|1|23|U|1775
7N2V|1|23|G|1776
*
7N2V|1|23|C|1788
7N2V|1|23|A|1789
7N2V|1|23|C|1790
7N2V|1|23|A|1791
7N2V|1|23|G|1792
*
7N2V|1|23|U|1827
7N2V|1|23|G|1828
7N2V|1|23|A|1829
7N2V|1|23|C|1830
*
7N2V|1|23|G|1975
7N2V|1|23|U|1976
7N2V|1|23|A|1977
7N2V|1|23|A|1978
7N2V|1|23|U|1979

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LB

50S ribosomal protein L2