J4_7NAW_001

3D structure

PDB id

7NAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.05 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7NAW|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NAW_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5565

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7NAW|1|A|G|115
7NAW|1|A|A|116
7NAW|1|A|G|117
7NAW|1|A|U|118
7NAW|1|A|A|119
7NAW|1|A|A|120
7NAW|1|A|U|121
7NAW|1|A|G|122
*
7NAW|1|A|U|239
7NAW|1|A|G|240
*
7NAW|1|A|C|286
7NAW|1|A|U|287
7NAW|1|A|A|288
7NAW|1|A|G|289
*
7NAW|1|A|C|311
7NAW|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17