J4_7NBU_011

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NBU_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0591

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NBU|1|a|A|1772
7NBU|1|a|A|1773
7NBU|1|a|C|1774
7NBU|1|a|U|1775
7NBU|1|a|G|1776
*
7NBU|1|a|C|1788
7NBU|1|a|A|1789
7NBU|1|a|C|1790
7NBU|1|a|A|1791
7NBU|1|a|G|1792
*
7NBU|1|a|U|1827
7NBU|1|a|G|1828
7NBU|1|a|A|1829
7NBU|1|a|C|1830
*
7NBU|1|a|G|1975
7NBU|1|a|U|1976
7NBU|1|a|A|1977
7NBU|1|a|A|1978
7NBU|1|a|U|1979

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2