J4_7NHK_001

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7NHK|1|A|C|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHK_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1399

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7NHK|1|A|C|270
7NHK|1|A|C|271
*
7NHK|1|A|G|409
7NHK|1|A|A|410
7NHK|1|A|G|411
7NHK|1|A|U|412
7NHK|1|A|A|413
7NHK|1|A|C|414
*
7NHK|1|A|G|438
7NHK|1|A|G|439
7NHK|1|A|A|440
7NHK|1|A|A|441
7NHK|1|A|U|442
7NHK|1|A|C|443
7NHK|1|A|C|444
7NHK|1|A|G|445
*
7NHK|1|A|C|460
7NHK|1|A|A|461
7NHK|1|A|A|462
7NHK|1|A|G|463

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L28