J4_7NHK_008

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHK_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0655

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NHK|1|A|G|1785
7NHK|1|A|A|1786
7NHK|1|A|C|1787
7NHK|1|A|U|1788
7NHK|1|A|G|1789
*
7NHK|1|A|C|1801
7NHK|1|A|A|1802
7NHK|1|A|C|1803
7NHK|1|A|A|1804
7NHK|1|A|G|1805
*
7NHK|1|A|U|1840
7NHK|1|A|G|1841
7NHK|1|A|A|1842
7NHK|1|A|C|1843
*
7NHK|1|A|G|1988
7NHK|1|A|U|1989
7NHK|1|A|A|1990
7NHK|1|A|A|1991
7NHK|1|A|C|1992

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2