J4_7NHK_010
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 7NHK|1|A|A|2301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHK_010 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.117
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NHK|1|A|C|2298
7NHK|1|A|A|2299
7NHK|1|A|A|2300
7NHK|1|A|A|2301
7NHK|1|A|G|2302
*
7NHK|1|A|U|2356
7NHK|1|A|U|2357
7NHK|1|A|G|2358
7NHK|1|A|A|2359
7NHK|1|A|C|2360
*
7NHK|1|A|G|2383
7NHK|1|A|G|2384
7NHK|1|A|G|2385
*
7NHK|1|A|C|2394
7NHK|1|A|G|2395
7NHK|1|A|G|2396
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain Y
- 50S ribosomal protein L27
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