J4_7NHN_001

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7NHN|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHN_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1508

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7NHN|1|A|C|270
7NHN|1|A|C|271
*
7NHN|1|A|G|416
7NHN|1|A|A|417
7NHN|1|A|G|418
7NHN|1|A|U|419
7NHN|1|A|A|420
7NHN|1|A|C|421
*
7NHN|1|A|G|445
7NHN|1|A|G|446
7NHN|1|A|A|447
7NHN|1|A|A|448
7NHN|1|A|U|449
7NHN|1|A|C|450
7NHN|1|A|C|451
7NHN|1|A|G|452
*
7NHN|1|A|C|467
7NHN|1|A|A|468
7NHN|1|A|A|469
7NHN|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28