J4_7NRC_008
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 7NRC|1|LA|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRC_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1156
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRC|1|LA|C|2654
7NRC|1|LA|U|2655
7NRC|1|LA|A|2656
7NRC|1|LA|A|2657
7NRC|1|LA|G|2658
*
7NRC|1|LA|U|2712
7NRC|1|LA|U|2713
7NRC|1|LA|G|2714
7NRC|1|LA|A|2715
7NRC|1|LA|U|2716
*
7NRC|1|LA|A|2740
7NRC|1|LA|C|2741
7NRC|1|LA|C|2742
*
7NRC|1|LA|G|2751
7NRC|1|LA|U|2752
7NRC|1|LA|G|2753
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L42-A
Coloring options: