J4_7NRC_009
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRC_009 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.1192
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|LA|U|3010
7NRC|1|LA|A|3011
7NRC|1|LA|A|3012
*
7NRC|1|LA|U|3042
7NRC|1|LA|C|3043
*
7NRC|1|LA|G|3098
7NRC|1|LA|C|3099
7NRC|1|LA|U|3100
*
7NRC|1|LA|A|3134
7NRC|1|LA|U|3135
7NRC|1|LA|G|3136
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LX
- 60S ribosomal protein L23-A
Coloring options: