3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAA*UC*GCU*AUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NRC_009 not in the Motif Atlas
Homologous match to J4_8P9A_020
Geometric discrepancy: 0.1192
The information below is about J4_8P9A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_65356.1
Basepair signature
cWW-tSS-cWW-cWW-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7NRC|1|LA|U|3010
7NRC|1|LA|A|3011
7NRC|1|LA|A|3012
*
7NRC|1|LA|U|3042
7NRC|1|LA|C|3043
*
7NRC|1|LA|G|3098
7NRC|1|LA|C|3099
7NRC|1|LA|U|3100
*
7NRC|1|LA|A|3134
7NRC|1|LA|U|3135
7NRC|1|LA|G|3136

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LQ
60S ribosomal protein L16-A
Chain LX
60S ribosomal protein L23-A

Coloring options:


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