J4_7NRC_011
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7NRC|1|S2|A|623, 7NRC|1|S2|A|1026, 7NRC|1|S2|U|1029, 7NRC|1|S2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRC_011 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0909
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NRC|1|S2|A|622
7NRC|1|S2|A|623
7NRC|1|S2|G|624
*
7NRC|1|S2|C|975
7NRC|1|S2|G|976
7NRC|1|S2|A|977
7NRC|1|S2|A|978
7NRC|1|S2|A|979
7NRC|1|S2|G|980
*
7NRC|1|S2|C|1021
7NRC|1|S2|C|1022
7NRC|1|S2|A|1023
7NRC|1|S2|U|1024
7NRC|1|S2|A|1025
7NRC|1|S2|A|1026
7NRC|1|S2|A|1027
7NRC|1|S2|C|1028
7NRC|1|S2|U|1029
7NRC|1|S2|A|1030
7NRC|1|S2|U|1031
7NRC|1|S2|G|1032
*
7NRC|1|S2|U|1103
7NRC|1|S2|U|1104
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain Lp
- 60S ribosomal protein L41-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Se
- 40S ribosomal protein S26-B
Coloring options: