J4_7NRD_001
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 7NRD|1|LA|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRD_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1366
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7NRD|1|LA|U|112
7NRD|1|LA|C|113
*
7NRD|1|LA|G|267
7NRD|1|LA|A|268
7NRD|1|LA|G|269
7NRD|1|LA|U|270
7NRD|1|LA|C|271
7NRD|1|LA|G|272
*
7NRD|1|LA|C|293
7NRD|1|LA|U|294
7NRD|1|LA|A|295
7NRD|1|LA|A|296
7NRD|1|LA|G|297
7NRD|1|LA|U|298
7NRD|1|LA|G|299
*
7NRD|1|LA|U|316
7NRD|1|LA|A|317
7NRD|1|LA|A|318
7NRD|1|LA|A|319
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: