J4_7NRD_002

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRD_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1494

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NRD|1|LA|C|185
7NRD|1|LA|U|186
7NRD|1|LA|A|187
7NRD|1|LA|U|188
7NRD|1|LA|G|189
*
7NRD|1|LA|C|205
7NRD|1|LA|G|206
7NRD|1|LA|U|207
7NRD|1|LA|C|208
*
7NRD|1|LA|G|212
7NRD|1|LA|A|213
7NRD|1|LA|G|214
*
7NRD|1|LA|C|226
7NRD|1|LA|G|227
7NRD|1|LA|U|228
7NRD|1|LA|G|229
7NRD|1|LA|U|230
7NRD|1|LA|G|231

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A