J4_7NRD_005

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRD_005 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.1653

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|LA|G|1674
7NRD|1|LA|G|1675
*
7NRD|1|LA|C|1693
7NRD|1|LA|U|1694
*
7NRD|1|LA|A|1752
7NRD|1|LA|G|1753
*
7NRD|1|LA|U|1772
7NRD|1|LA|C|1773

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LW

60S ribosomal protein L22-A

Chain Li

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L38