J4_7NRD_011
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7NRD|1|S2|A|623, 7NRD|1|S2|A|1026, 7NRD|1|S2|U|1029, 7NRD|1|S2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRD_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1003
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|A|622
7NRD|1|S2|A|623
7NRD|1|S2|G|624
*
7NRD|1|S2|C|975
7NRD|1|S2|G|976
7NRD|1|S2|A|977
7NRD|1|S2|A|978
7NRD|1|S2|A|979
7NRD|1|S2|G|980
*
7NRD|1|S2|C|1021
7NRD|1|S2|C|1022
7NRD|1|S2|A|1023
7NRD|1|S2|U|1024
7NRD|1|S2|A|1025
7NRD|1|S2|A|1026
7NRD|1|S2|A|1027
7NRD|1|S2|C|1028
7NRD|1|S2|U|1029
7NRD|1|S2|A|1030
7NRD|1|S2|U|1031
7NRD|1|S2|G|1032
*
7NRD|1|S2|U|1103
7NRD|1|S2|U|1104
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- 60S ribosomal protein L41-B
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Se
- 40S ribosomal protein S26-B
Coloring options: