J4_7NSO_008

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSO_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.057

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NSO|1|A|A|1772
7NSO|1|A|A|1773
7NSO|1|A|C|1774
7NSO|1|A|U|1775
7NSO|1|A|G|1776
*
7NSO|1|A|C|1788
7NSO|1|A|A|1789
7NSO|1|A|C|1790
7NSO|1|A|A|1791
7NSO|1|A|G|1792
*
7NSO|1|A|U|1827
7NSO|1|A|G|1828
7NSO|1|A|A|1829
7NSO|1|A|C|1830
*
7NSO|1|A|G|1975
7NSO|1|A|U|1976
7NSO|1|A|A|1977
7NSO|1|A|A|1978
7NSO|1|A|U|1979

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA