J4_7NSQ_008

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSQ_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.062

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NSQ|1|A|A|1772
7NSQ|1|A|A|1773
7NSQ|1|A|C|1774
7NSQ|1|A|U|1775
7NSQ|1|A|G|1776
*
7NSQ|1|A|C|1788
7NSQ|1|A|A|1789
7NSQ|1|A|C|1790
7NSQ|1|A|A|1791
7NSQ|1|A|G|1792
*
7NSQ|1|A|U|1827
7NSQ|1|A|G|1828
7NSQ|1|A|A|1829
7NSQ|1|A|C|1830
*
7NSQ|1|A|G|1975
7NSQ|1|A|U|1976
7NSQ|1|A|A|1977
7NSQ|1|A|A|1978
7NSQ|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2