J4_7NWT_008

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NWT_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.044

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NWT|1|1|A|1772
7NWT|1|1|A|1773
7NWT|1|1|C|1774
7NWT|1|1|U|1775
7NWT|1|1|G|1776
*
7NWT|1|1|C|1788
7NWT|1|1|A|1789
7NWT|1|1|C|1790
7NWT|1|1|A|1791
7NWT|1|1|G|1792
*
7NWT|1|1|U|1827
7NWT|1|1|G|1828
7NWT|1|1|A|1829
7NWT|1|1|C|1830
*
7NWT|1|1|G|1975
7NWT|1|1|U|1976
7NWT|1|1|A|1977
7NWT|1|1|A|1978
7NWT|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2