J4_7O19_010

3D structure

PDB id

7O19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7O19|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O19_010 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0615

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7O19|1|BA|U|1313
7O19|1|BA|C|1314
*
7O19|1|BA|G|1338
7O19|1|BA|G|1339
7O19|1|BA|U|1340
7O19|1|BA|G|1341
7O19|1|BA|A|1342
7O19|1|BA|G|1343
*
7O19|1|BA|C|1404
7O19|1|BA|U|1405
*
7O19|1|BA|A|1597
7O19|1|BA|A|1598
7O19|1|BA|U|1599
7O19|1|BA|C|1600
7O19|1|BA|G|1601
7O19|1|BA|U|1602
7O19|1|BA|A|1603

Current chains

Chain BA

Ribosomal RNA 23S

Nearby chains

Chain BT

50S ribosomal protein L23