J4_7O5B_003
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7O5B|1|A|G|585, 7O5B|1|A|A|824, 7O5B|1|A|C|826, 7O5B|1|A|A|828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O5B_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0916
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
7O5B|1|A|G|584
7O5B|1|A|G|585
7O5B|1|A|G|586
*
7O5B|1|A|C|773
7O5B|1|A|G|774
7O5B|1|A|A|775
7O5B|1|A|A|776
7O5B|1|A|A|777
7O5B|1|A|G|778
*
7O5B|1|A|C|819
7O5B|1|A|C|820
7O5B|1|A|G|821
7O5B|1|A|U|822
7O5B|1|A|A|823
7O5B|1|A|A|824
7O5B|1|A|A|825
7O5B|1|A|C|826
7O5B|1|A|G|827
7O5B|1|A|A|828
7O5B|1|A|U|829
7O5B|1|A|G|830
*
7O5B|1|A|C|889
7O5B|1|A|C|890
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: