J4_7O5B_005

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7O5B|1|X|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5B_005 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1371

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7O5B|1|X|C|271
7O5B|1|X|C|272
*
7O5B|1|X|G|417
7O5B|1|X|A|418
7O5B|1|X|G|419
7O5B|1|X|U|420
7O5B|1|X|A|421
7O5B|1|X|C|422
*
7O5B|1|X|G|446
7O5B|1|X|G|447
7O5B|1|X|A|448
7O5B|1|X|A|449
7O5B|1|X|U|450
7O5B|1|X|C|451
7O5B|1|X|C|452
7O5B|1|X|G|453
*
7O5B|1|X|C|468
7O5B|1|X|A|469
7O5B|1|X|A|470
7O5B|1|X|G|471

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain v

50S ribosomal protein L28