J4_7O5B_014
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 7O5B|1|X|A|2317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O5B_014 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1549
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O5B|1|X|C|2314
7O5B|1|X|A|2315
7O5B|1|X|A|2316
7O5B|1|X|A|2317
7O5B|1|X|G|2318
*
7O5B|1|X|U|2372
7O5B|1|X|U|2373
7O5B|1|X|G|2374
7O5B|1|X|A|2375
7O5B|1|X|C|2376
*
7O5B|1|X|G|2399
7O5B|1|X|G|2400
7O5B|1|X|G|2401
*
7O5B|1|X|C|2410
7O5B|1|X|G|2411
7O5B|1|X|G|2412
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L18
- Chain u
- 50S ribosomal protein L27
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