J4_7O7Y_016
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7O7Y|1|B5|A|3980
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O7Y_016 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1988
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7O7Y|1|B5|C|3977
7O7Y|1|B5|U|3978
7O7Y|1|B5|A|3979
7O7Y|1|B5|A|3980
7O7Y|1|B5|G|3981
*
7O7Y|1|B5|U|4035
7O7Y|1|B5|U|4036
7O7Y|1|B5|G|4037
7O7Y|1|B5|A|4038
7O7Y|1|B5|PSU|4039
*
7O7Y|1|B5|A|4063
7O7Y|1|B5|C|4064
7O7Y|1|B5|C|4065
*
7O7Y|1|B5|G|4074
7O7Y|1|B5|G|4075
7O7Y|1|B5|G|4076
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BT
- eL21
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- eL42
Coloring options: