J4_7O7Z_016

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUAAG*UUGA(PSU)*ACC*GGG

Length

16 nucleotides

Bulged bases

7O7Z|1|B5|A|3980

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O7Z_016 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.1997

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|C|3977
7O7Z|1|B5|U|3978
7O7Z|1|B5|A|3979
7O7Z|1|B5|A|3980
7O7Z|1|B5|G|3981
*
7O7Z|1|B5|U|4035
7O7Z|1|B5|U|4036
7O7Z|1|B5|G|4037
7O7Z|1|B5|A|4038
7O7Z|1|B5|PSU|4039
*
7O7Z|1|B5|A|4063
7O7Z|1|B5|C|4064
7O7Z|1|B5|C|4065
*
7O7Z|1|B5|G|4074
7O7Z|1|B5|G|4075
7O7Z|1|B5|G|4076

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BT

eL21

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42