J4_7O80_007
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*(OMC)AUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 7O80|1|B5|A|2209, 7O80|1|B5|U|2212, 7O80|1|B5|U|2671
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O80_007 not in the Motif Atlas
- Homologous match to J4_8GLP_004
- Geometric discrepancy: 0.0649
- The information below is about J4_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O80|1|B5|OMC|2208
7O80|1|B5|A|2209
7O80|1|B5|A|2210
7O80|1|B5|A|2211
7O80|1|B5|U|2212
7O80|1|B5|A|2213
7O80|1|B5|U|2214
*
7O80|1|B5|A|2232
7O80|1|B5|G|2233
7O80|1|B5|G|2234
*
7O80|1|B5|OMC|2667
7O80|1|B5|A|2668
7O80|1|B5|U|2669
7O80|1|B5|G|2670
7O80|1|B5|U|2671
7O80|1|B5|U|2672
*
7O80|1|B5|A|3588
7O80|1|B5|G|3589
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BP
- uL22
- Chain BR
- 60S ribosomal protein L19
- Chain Bd
- eL31
Coloring options: