J4_7O81_001
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7O81|1|A2|G|408
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O81_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2232
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|A2|C|98
7O81|1|A2|A2M|99
7O81|1|A2|U|100
7O81|1|A2|U|101
7O81|1|A2|A|102
7O81|1|A2|A|103
7O81|1|A2|A|104
7O81|1|A2|PSU|105
7O81|1|A2|C|106
*
7O81|1|A2|G|356
7O81|1|A2|C|357
7O81|1|A2|C|358
*
7O81|1|A2|G|406
7O81|1|A2|PSU|407
7O81|1|A2|G|408
7O81|1|A2|A|409
7O81|1|A2|C|410
*
7O81|1|A2|G|432
7O81|1|A2|G|433
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
- Chain Aw
- 40S ribosomal protein S23
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