J4_7ODE_006

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ODE_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0809

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7ODE|1|I|A|1772
7ODE|1|I|A|1773
7ODE|1|I|C|1774
7ODE|1|I|U|1775
7ODE|1|I|G|1776
*
7ODE|1|I|C|1788
7ODE|1|I|A|1789
7ODE|1|I|C|1790
7ODE|1|I|A|1791
7ODE|1|I|G|1792
*
7ODE|1|I|U|1827
7ODE|1|I|G|1828
7ODE|1|I|A|1829
7ODE|1|I|C|1830
*
7ODE|1|I|G|1975
7ODE|1|I|U|1976
7ODE|1|I|A|1977
7ODE|1|I|A|1978
7ODE|1|I|U|1979

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2