J4_7OE0_001

3D structure

PDB id

7OE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-30S delta rbfA ribosomal subunit class F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7OE0|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OE0_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.3476

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OE0|1|A|G|115
7OE0|1|A|A|116
7OE0|1|A|G|117
7OE0|1|A|U|118
7OE0|1|A|A|119
7OE0|1|A|A|120
7OE0|1|A|U|121
7OE0|1|A|G|122
*
7OE0|1|A|U|239
7OE0|1|A|G|240
*
7OE0|1|A|C|286
7OE0|1|A|U|287
7OE0|1|A|A|288
7OE0|1|A|G|289
*
7OE0|1|A|C|311
7OE0|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17