J4_7OE1_001

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7OE1|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OE1_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.3225

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OE1|1|A|G|115
7OE1|1|A|A|116
7OE1|1|A|G|117
7OE1|1|A|U|118
7OE1|1|A|A|119
7OE1|1|A|A|120
7OE1|1|A|U|121
7OE1|1|A|G|122
*
7OE1|1|A|U|239
7OE1|1|A|G|240
*
7OE1|1|A|C|286
7OE1|1|A|U|287
7OE1|1|A|A|288
7OE1|1|A|G|289
*
7OE1|1|A|C|311
7OE1|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17