J4_7OE1_002

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OE1_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2678

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OE1|1|A|G|142
7OE1|1|A|A|143
7OE1|1|A|G|144
*
7OE1|1|A|C|178
7OE1|1|A|A|179
7OE1|1|A|U|180
7OE1|1|A|A|181
7OE1|1|A|A|182
7OE1|1|A|C|183
7OE1|1|A|G|184
*
7OE1|1|A|C|193
7OE1|1|A|C|194
7OE1|1|A|A|195
7OE1|1|A|A|196
7OE1|1|A|A|197
7OE1|1|A|G|198
*
7OE1|1|A|U|219
7OE1|1|A|G|220
7OE1|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20