J4_7OIF_008

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIF_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0632

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7OIF|1|1|A|1772
7OIF|1|1|A|1773
7OIF|1|1|C|1774
7OIF|1|1|U|1775
7OIF|1|1|G|1776
*
7OIF|1|1|C|1788
7OIF|1|1|A|1789
7OIF|1|1|C|1790
7OIF|1|1|A|1791
7OIF|1|1|G|1792
*
7OIF|1|1|U|1827
7OIF|1|1|G|1828
7OIF|1|1|A|1829
7OIF|1|1|C|1830
*
7OIF|1|1|G|1975
7OIF|1|1|U|1976
7OIF|1|1|A|1977
7OIF|1|1|A|1978
7OIF|1|1|U|1979

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2