J4_7OIG_008

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIG_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.069

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7OIG|1|1|A|1772
7OIG|1|1|A|1773
7OIG|1|1|C|1774
7OIG|1|1|U|1775
7OIG|1|1|G|1776
*
7OIG|1|1|C|1788
7OIG|1|1|A|1789
7OIG|1|1|C|1790
7OIG|1|1|A|1791
7OIG|1|1|G|1792
*
7OIG|1|1|U|1827
7OIG|1|1|G|1828
7OIG|1|1|A|1829
7OIG|1|1|C|1830
*
7OIG|1|1|G|1975
7OIG|1|1|U|1976
7OIG|1|1|A|1977
7OIG|1|1|A|1978
7OIG|1|1|U|1979

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2