J4_7OIZ_012

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIZ_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0619

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7OIZ|1|a|A|1772
7OIZ|1|a|A|1773
7OIZ|1|a|C|1774
7OIZ|1|a|U|1775
7OIZ|1|a|G|1776
*
7OIZ|1|a|C|1788
7OIZ|1|a|A|1789
7OIZ|1|a|C|1790
7OIZ|1|a|A|1791
7OIZ|1|a|G|1792
*
7OIZ|1|a|U|1827
7OIZ|1|a|G|1828
7OIZ|1|a|A|1829
7OIZ|1|a|C|1830
*
7OIZ|1|a|G|1975
7OIZ|1|a|U|1976
7OIZ|1|a|A|1977
7OIZ|1|a|A|1978
7OIZ|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2