J4_7OOD_011

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7OOD|1|3|U|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OOD_011 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.168

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|C|272
7OOD|1|3|C|273
*
7OOD|1|3|G|408
7OOD|1|3|A|409
7OOD|1|3|G|410
7OOD|1|3|U|411
7OOD|1|3|A|412
7OOD|1|3|G|413
*
7OOD|1|3|U|435
7OOD|1|3|G|436
7OOD|1|3|A|437
7OOD|1|3|A|438
7OOD|1|3|U|439
7OOD|1|3|C|440
7OOD|1|3|U|441
7OOD|1|3|G|442
*
7OOD|1|3|U|457
7OOD|1|3|A|458
7OOD|1|3|A|459
7OOD|1|3|G|460

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28