J4_7OPE_006

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7OPE|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OPE_006 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0944

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7OPE|1|A|G|1349
7OPE|1|A|U|1350
7OPE|1|A|U|1351
7OPE|1|A|U|1352
7OPE|1|A|C|1353
*
7OPE|1|A|G|1377
7OPE|1|A|G|1378
7OPE|1|A|U|1379
7OPE|1|A|U|1380
7OPE|1|A|A|1381
7OPE|1|A|G|1382
*
7OPE|1|A|C|1443
7OPE|1|A|C|1444
*
7OPE|1|A|G|1642
7OPE|1|A|C|1643
7OPE|1|A|C|1644
7OPE|1|A|C|1645
7OPE|1|A|G|1646
7OPE|1|A|U|1647
7OPE|1|A|A|1648
7OPE|1|A|C|1649

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L23

Chain h

50S ribosomal protein L34