J4_7OSA_003
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 7OSA|1|25S|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSA_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1284
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7OSA|1|25S|U|112
7OSA|1|25S|C|113
*
7OSA|1|25S|G|267
7OSA|1|25S|A|268
7OSA|1|25S|G|269
7OSA|1|25S|U|270
7OSA|1|25S|C|271
7OSA|1|25S|G|272
*
7OSA|1|25S|C|293
7OSA|1|25S|U|294
7OSA|1|25S|A|295
7OSA|1|25S|A|296
7OSA|1|25S|G|297
7OSA|1|25S|U|298
7OSA|1|25S|G|299
*
7OSA|1|25S|U|316
7OSA|1|25S|A|317
7OSA|1|25S|A|318
7OSA|1|25S|A|319
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL13
- 60S ribosomal protein L13
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL36
- 60S ribosomal protein L36-A
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
Coloring options: