J4_7OSA_005
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7OSA|1|25S|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSA_005 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0656
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OSA|1|25S|G|1492
7OSA|1|25S|G|1493
7OSA|1|25S|U|1494
7OSA|1|25S|U|1495
7OSA|1|25S|C|1496
*
7OSA|1|25S|G|1520
7OSA|1|25S|G|1521
7OSA|1|25S|U|1522
7OSA|1|25S|U|1523
7OSA|1|25S|A|1524
7OSA|1|25S|G|1525
*
7OSA|1|25S|C|1614
7OSA|1|25S|C|1615
*
7OSA|1|25S|G|1829
7OSA|1|25S|G|1830
7OSA|1|25S|U|1831
7OSA|1|25S|C|1832
7OSA|1|25S|G|1833
7OSA|1|25S|U|1834
7OSA|1|25S|A|1835
7OSA|1|25S|C|1836
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain eL19
- 60S ribosomal protein L19-A
- Chain eL34
- 60S ribosomal protein L34-A
- Chain eL37
- Ribosomal protein L37
- Chain eL38
- BJ4_G0032190.mRNA.1.CDS.1
- Chain eL39
- 60S ribosomal protein L39
- Chain uL23
- 60S ribosomal protein L25
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