J4_7OSA_007
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSA_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0626
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OSA|1|25S|G|2130
7OSA|1|25S|A|2131
7OSA|1|25S|C|2132
7OSA|1|25S|U|2133
7OSA|1|25S|G|2134
*
7OSA|1|25S|C|2146
7OSA|1|25S|A|2147
7OSA|1|25S|U|2148
7OSA|1|25S|A|2149
7OSA|1|25S|G|2150
*
7OSA|1|25S|U|2186
7OSA|1|25S|G|2187
7OSA|1|25S|A|2188
7OSA|1|25S|U|2189
7OSA|1|25S|U|2190
*
7OSA|1|25S|A|2317
7OSA|1|25S|U|2318
7OSA|1|25S|U|2319
7OSA|1|25S|A|2320
7OSA|1|25S|A|2321
7OSA|1|25S|C|2322
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain eL41
- eL41
- Chain eL43
- 60S ribosomal protein L43-A
- Chain uL2
- 60S ribosomal protein L2-B
Coloring options: