3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
7OSM|1|18S|A|623, 7OSM|1|18S|A|1026, 7OSM|1|18S|U|1029, 7OSM|1|18S|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OSM_002 not in the Motif Atlas
Homologous match to J4_8C3A_022
Geometric discrepancy: 0.0753
The information below is about J4_8C3A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.4
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7OSM|1|18S|A|622
7OSM|1|18S|A|623
7OSM|1|18S|G|624
*
7OSM|1|18S|C|975
7OSM|1|18S|G|976
7OSM|1|18S|A|977
7OSM|1|18S|A|978
7OSM|1|18S|A|979
7OSM|1|18S|G|980
*
7OSM|1|18S|C|1021
7OSM|1|18S|C|1022
7OSM|1|18S|A|1023
7OSM|1|18S|U|1024
7OSM|1|18S|A|1025
7OSM|1|18S|A|1026
7OSM|1|18S|A|1027
7OSM|1|18S|C|1028
7OSM|1|18S|U|1029
7OSM|1|18S|A|1030
7OSM|1|18S|U|1031
7OSM|1|18S|G|1032
*
7OSM|1|18S|U|1103
7OSM|1|18S|U|1104

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain 25S
Large subunit ribosomal RNA; LSU rRNA
Chain eL41
eL41
Chain eS26
40S ribosomal protein S26
Chain uS11
40S ribosomal protein S14-A
Chain uS12
40S ribosomal protein S23
Chain uS15
40S ribosomal protein S13
Chain uS17
40S ribosomal protein S11-B
Chain uS8
40S ribosomal protein S22-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5543 s